3D structure

PDB id
4V5P (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
Length
32 nucleotides
Bulged bases
4V5P|1|BA|A|945, 4V5P|1|BA|C|975
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5P|1|BA|C|817
4V5P|1|BA|G|818
4V5P|1|BA|A|819
4V5P|1|BA|A|820
4V5P|1|BA|A|821
4V5P|1|BA|U|822
*
4V5P|1|BA|A|835
4V5P|1|BA|G|836
*
4V5P|1|BA|U|943
4V5P|1|BA|G|944
4V5P|1|BA|A|945
4V5P|1|BA|G|946
*
4V5P|1|BA|C|971
4V5P|1|BA|G|972
4V5P|1|BA|A|973
4V5P|1|BA|G|974
4V5P|1|BA|C|975
4V5P|1|BA|G|975|||A
4V5P|1|BA|C|976
*
4V5P|1|BA|G|987
4V5P|1|BA|A|988
4V5P|1|BA|G|989
4V5P|1|BA|A|990
4V5P|1|BA|C|991
*
4V5P|1|BA|G|1163
4V5P|1|BA|G|1164
*
4V5P|1|BA|C|1185
4V5P|1|BA|G|1186
4V5P|1|BA|G|1187
4V5P|1|BA|U|1188
4V5P|1|BA|A|1189
4V5P|1|BA|G|1190

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain B3
50S RIBOSOMAL PROTEIN L30
Chain B8
50S RIBOSOMAL PROTEIN L35
Chain BB
5S ribosomal RNA; 5S rRNA
Chain BP
50S RIBOSOMAL PROTEIN L15
Chain BU
50S RIBOSOMAL PROTEIN L20
Chain BV
50S RIBOSOMAL PROTEIN L21

Coloring options:

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