J7_4V5P_002
3D structure
- PDB id
- 4V5P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 4V5P|1|DA|A|945, 4V5P|1|DA|C|975
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5P|1|DA|C|817
4V5P|1|DA|G|818
4V5P|1|DA|A|819
4V5P|1|DA|A|820
4V5P|1|DA|A|821
4V5P|1|DA|U|822
*
4V5P|1|DA|A|835
4V5P|1|DA|G|836
*
4V5P|1|DA|U|943
4V5P|1|DA|G|944
4V5P|1|DA|A|945
4V5P|1|DA|G|946
*
4V5P|1|DA|C|971
4V5P|1|DA|G|972
4V5P|1|DA|A|973
4V5P|1|DA|G|974
4V5P|1|DA|C|975
4V5P|1|DA|G|975|||A
4V5P|1|DA|C|976
*
4V5P|1|DA|G|987
4V5P|1|DA|A|988
4V5P|1|DA|G|989
4V5P|1|DA|A|990
4V5P|1|DA|C|991
*
4V5P|1|DA|G|1163
4V5P|1|DA|G|1164
*
4V5P|1|DA|C|1185
4V5P|1|DA|G|1186
4V5P|1|DA|G|1187
4V5P|1|DA|U|1188
4V5P|1|DA|A|1189
4V5P|1|DA|G|1190
Current chains
- Chain DA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain D3
- 50S RIBOSOMAL PROTEIN L30
- Chain D8
- 50S RIBOSOMAL PROTEIN L35
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DP
- 50S RIBOSOMAL PROTEIN L15
- Chain DU
- 50S RIBOSOMAL PROTEIN L20
- Chain DV
- 50S RIBOSOMAL PROTEIN L21
Coloring options: