J7_4V5Y_001

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

4V5Y|1|BB|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5Y|1|BB|C|8
4V5Y|1|BB|G|9
4V5Y|1|BB|A|10
4V5Y|1|BB|C|11
4V5Y|1|BB|U|12
4V5Y|1|BB|A|13
4V5Y|1|BB|A|14
4V5Y|1|BB|G|15
*
4V5Y|1|BB|U|525
4V5Y|1|BB|A|526
4V5Y|1|BB|C|527
4V5Y|1|BB|A|528
4V5Y|1|BB|A|529
4V5Y|1|BB|G|530
4V5Y|1|BB|C|531
*
4V5Y|1|BB|G|2018
4V5Y|1|BB|A|2019
4V5Y|1|BB|A|2020
4V5Y|1|BB|C|2021
4V5Y|1|BB|U|2022
4V5Y|1|BB|C|2023
*
4V5Y|1|BB|G|2040
4V5Y|1|BB|U|2041
4V5Y|1|BB|A|2042
4V5Y|1|BB|C|2043
*
4V5Y|1|BB|G|2625
4V5Y|1|BB|C|2626
4V5Y|1|BB|G|2627
4V5Y|1|BB|C|2628
4V5Y|1|BB|U|2629
4V5Y|1|BB|G|2630
*
4V5Y|1|BB|C|2788
4V5Y|1|BB|C|2789
*
4V5Y|1|BB|G|2894
4V5Y|1|BB|G|2895

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22