J7_4V5Y_002
3D structure
- PDB id
- 4V5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.45 Å
Loop
- Sequence
- CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 33 nucleotides
- Bulged bases
- 4V5Y|1|BB|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5Y|1|BB|C|817
4V5Y|1|BB|G|818
4V5Y|1|BB|A|819
4V5Y|1|BB|A|820
4V5Y|1|BB|A|821
4V5Y|1|BB|G|822
*
4V5Y|1|BB|C|835
4V5Y|1|BB|G|836
4V5Y|1|BB|C|837
*
4V5Y|1|BB|G|942
4V5Y|1|BB|A|943
4V5Y|1|BB|C|944
4V5Y|1|BB|A|945
4V5Y|1|BB|C|946
*
4V5Y|1|BB|G|971
4V5Y|1|BB|A|972
4V5Y|1|BB|A|973
4V5Y|1|BB|G|974
4V5Y|1|BB|A|975
4V5Y|1|BB|G|976
*
4V5Y|1|BB|C|987
4V5Y|1|BB|A|988
4V5Y|1|BB|G|989
4V5Y|1|BB|A|990
4V5Y|1|BB|C|991
*
4V5Y|1|BB|G|1163
4V5Y|1|BB|C|1164
*
4V5Y|1|BB|G|1185
4V5Y|1|BB|G|1186
4V5Y|1|BB|G|1187
4V5Y|1|BB|U|1188
4V5Y|1|BB|A|1189
4V5Y|1|BB|G|1190
Current chains
- Chain BB
- 23S rRNA
Nearby chains
- Chain B3
- 50S ribosomal protein L35
- Chain BA
- 5S ribosomal RNA; 5S rRNA
- Chain BL
- 50S ribosomal protein L15
- Chain BQ
- 50S ribosomal protein L20
- Chain BR
- 50S ribosomal protein L21
- Chain BY
- 50S ribosomal protein L30
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