J7_4V64_003

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

4V64|1|DB|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V64|1|DB|C|8
4V64|1|DB|G|9
4V64|1|DB|A|10
4V64|1|DB|C|11
4V64|1|DB|U|12
4V64|1|DB|A|13
4V64|1|DB|A|14
4V64|1|DB|G|15
*
4V64|1|DB|U|525
4V64|1|DB|A|526
4V64|1|DB|C|527
4V64|1|DB|A|528
4V64|1|DB|A|529
4V64|1|DB|G|530
4V64|1|DB|C|531
*
4V64|1|DB|G|2018
4V64|1|DB|A|2019
4V64|1|DB|A|2020
4V64|1|DB|C|2021
4V64|1|DB|U|2022
4V64|1|DB|C|2023
*
4V64|1|DB|G|2040
4V64|1|DB|U|2041
4V64|1|DB|A|2042
4V64|1|DB|C|2043
*
4V64|1|DB|G|2625
4V64|1|DB|C|2626
4V64|1|DB|G|2627
4V64|1|DB|C|2628
4V64|1|DB|U|2629
4V64|1|DB|G|2630
*
4V64|1|DB|C|2788
4V64|1|DB|C|2789
*
4V64|1|DB|G|2894
4V64|1|DB|G|2895

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DJ

50S ribosomal protein L13

Chain DQ

50S ribosomal protein L20

Chain DS

50S ribosomal protein L22