J7_4V6E_003

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

4V6E|1|DA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6E|1|DA|C|8
4V6E|1|DA|G|9
4V6E|1|DA|A|10
4V6E|1|DA|C|11
4V6E|1|DA|U|12
4V6E|1|DA|A|13
4V6E|1|DA|A|14
4V6E|1|DA|G|15
*
4V6E|1|DA|U|525
4V6E|1|DA|A|526
4V6E|1|DA|C|527
4V6E|1|DA|A|528
4V6E|1|DA|A|529
4V6E|1|DA|G|530
4V6E|1|DA|C|531
*
4V6E|1|DA|G|2018
4V6E|1|DA|A|2019
4V6E|1|DA|A|2020
4V6E|1|DA|C|2021
4V6E|1|DA|U|2022
4V6E|1|DA|C|2023
*
4V6E|1|DA|G|2040
4V6E|1|DA|U|2041
4V6E|1|DA|A|2042
4V6E|1|DA|C|2043
*
4V6E|1|DA|G|2625
4V6E|1|DA|C|2626
4V6E|1|DA|G|2627
4V6E|1|DA|C|2628
4V6E|1|DA|U|2629
4V6E|1|DA|G|2630
*
4V6E|1|DA|C|2788
4V6E|1|DA|C|2789
*
4V6E|1|DA|G|2894
4V6E|1|DA|G|2895

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DJ

50S ribosomal protein L13

Chain DQ

50S ribosomal protein L20

Chain DS

50S ribosomal protein L22