J7_4V6G_004

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

4V6G|1|DA|A|945, 4V6G|1|DA|C|974|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6G|1|DA|C|817
4V6G|1|DA|G|818
4V6G|1|DA|A|819
4V6G|1|DA|A|820
4V6G|1|DA|A|821
4V6G|1|DA|U|822
*
4V6G|1|DA|A|835
4V6G|1|DA|G|836
*
4V6G|1|DA|U|943
4V6G|1|DA|G|944
4V6G|1|DA|A|945
4V6G|1|DA|G|946
*
4V6G|1|DA|C|971
4V6G|1|DA|G|972
4V6G|1|DA|A|973
4V6G|1|DA|G|974
4V6G|1|DA|C|974|||A
4V6G|1|DA|G|975
4V6G|1|DA|C|976
*
4V6G|1|DA|G|987
4V6G|1|DA|A|988
4V6G|1|DA|G|989
4V6G|1|DA|A|990
4V6G|1|DA|C|991
*
4V6G|1|DA|G|1163
4V6G|1|DA|G|1164
*
4V6G|1|DA|C|1185
4V6G|1|DA|G|1186
4V6G|1|DA|G|1187
4V6G|1|DA|U|1188
4V6G|1|DA|A|1189
4V6G|1|DA|G|1190

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L20

Chain D2

50S ribosomal protein L21

Chain D8

50S ribosomal protein L35

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DO

50S ribosomal protein L15

Chain DX

50S ribosomal protein L30