J7_4V7L_002
3D structure
- PDB id
- 4V7L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structures of viomycin bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACGGCGUCAAGCCGGUAAG*CGAGGUC
- Length
- 60 nucleotides
- Bulged bases
- 4V7L|1|DA|G|530, 4V7L|1|DA|C|2021, 4V7L|1|DA|A|2790, 4V7L|1|DA|G|2795, 4V7L|1|DA|U|2796, 4V7L|1|DA|C|2799, 4V7L|1|DA|A|2801, 4V7L|1|DA|G|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7L|1|DA|G|7
4V7L|1|DA|A|8
4V7L|1|DA|U|9
4V7L|1|DA|G|10
4V7L|1|DA|G|11
4V7L|1|DA|U|12
4V7L|1|DA|A|13
4V7L|1|DA|A|14
4V7L|1|DA|G|15
*
4V7L|1|DA|U|525
4V7L|1|DA|A|526
4V7L|1|DA|C|527
4V7L|1|DA|A|528
4V7L|1|DA|A|529
4V7L|1|DA|G|530
4V7L|1|DA|C|531
*
4V7L|1|DA|G|2018
4V7L|1|DA|A|2019
4V7L|1|DA|A|2020
4V7L|1|DA|C|2021
4V7L|1|DA|U|2022
4V7L|1|DA|G|2023
*
4V7L|1|DA|C|2040
4V7L|1|DA|U|2041
4V7L|1|DA|A|2042
4V7L|1|DA|C|2043
*
4V7L|1|DA|G|2625
4V7L|1|DA|C|2626
4V7L|1|DA|G|2627
4V7L|1|DA|C|2628
4V7L|1|DA|A|2629
4V7L|1|DA|G|2630
*
4V7L|1|DA|C|2788
4V7L|1|DA|C|2789
4V7L|1|DA|A|2790
4V7L|1|DA|C|2791
4V7L|1|DA|G|2792
4V7L|1|DA|G|2793
4V7L|1|DA|C|2794
4V7L|1|DA|G|2795
4V7L|1|DA|U|2796
4V7L|1|DA|C|2799
4V7L|1|DA|A|2801
4V7L|1|DA|A|2801|||A
4V7L|1|DA|G|2802
4V7L|1|DA|C|2803
4V7L|1|DA|C|2804
4V7L|1|DA|G|2805
4V7L|1|DA|G|2807
4V7L|1|DA|U|2808
4V7L|1|DA|A|2809
4V7L|1|DA|A|2810
4V7L|1|DA|G|2811
*
4V7L|1|DA|C|2889
4V7L|1|DA|G|2891
4V7L|1|DA|A|2892
4V7L|1|DA|G|2893
4V7L|1|DA|G|2894
4V7L|1|DA|U|2895
4V7L|1|DA|C|2896
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain BH
- 50S ribosomal protein L6
- Chain D5
- 50S ribosomal protein L32
- Chain DE
- 50S ribosomal protein L3
- Chain DN
- 50S ribosomal protein L13
- Chain DU
- 50S ribosomal protein L20
- Chain DW
- 50S ribosomal protein L22
Coloring options: