J7_4V7P_002

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

4V7P|1|CA|A|945, 4V7P|1|CA|C|974|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7P|1|CA|C|817
4V7P|1|CA|G|818
4V7P|1|CA|A|819
4V7P|1|CA|A|820
4V7P|1|CA|A|821
4V7P|1|CA|U|822
*
4V7P|1|CA|A|835
4V7P|1|CA|G|836
*
4V7P|1|CA|U|943
4V7P|1|CA|G|944
4V7P|1|CA|A|945
4V7P|1|CA|G|946
*
4V7P|1|CA|C|971
4V7P|1|CA|G|972
4V7P|1|CA|A|973
4V7P|1|CA|G|974|||A
4V7P|1|CA|C|974|||B
4V7P|1|CA|G|975
4V7P|1|CA|C|976
*
4V7P|1|CA|G|987
4V7P|1|CA|A|988
4V7P|1|CA|G|989
4V7P|1|CA|A|990
4V7P|1|CA|C|991
*
4V7P|1|CA|G|1163
4V7P|1|CA|G|1164
*
4V7P|1|CA|C|1185
4V7P|1|CA|G|1186
4V7P|1|CA|G|1187
4V7P|1|CA|U|1188
4V7P|1|CA|A|1189
4V7P|1|CA|G|1190

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L35

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CL

50S ribosomal protein L15

Chain CQ

50S ribosomal protein L20

Chain CR

50S ribosomal protein L21

Chain CZ

50S ribosomal protein L30