J7_4V7W_003

3D structure

PDB id

4V7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACGGCGUCAAGCCGGUAAG*CGAGGUC

Length

60 nucleotides

Bulged bases

4V7W|1|DA|G|530, 4V7W|1|DA|C|2021, 4V7W|1|DA|A|2790, 4V7W|1|DA|G|2795, 4V7W|1|DA|U|2796, 4V7W|1|DA|C|2799, 4V7W|1|DA|A|2801, 4V7W|1|DA|G|2802, 4V7W|1|DA|U|2895

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7W|1|DA|G|7
4V7W|1|DA|A|8
4V7W|1|DA|U|9
4V7W|1|DA|G|10
4V7W|1|DA|G|11
4V7W|1|DA|U|12
4V7W|1|DA|A|13
4V7W|1|DA|A|14
4V7W|1|DA|G|15
*
4V7W|1|DA|U|525
4V7W|1|DA|A|526
4V7W|1|DA|C|527
4V7W|1|DA|A|528
4V7W|1|DA|A|529
4V7W|1|DA|G|530
4V7W|1|DA|C|531
*
4V7W|1|DA|G|2018
4V7W|1|DA|A|2019
4V7W|1|DA|A|2020
4V7W|1|DA|C|2021
4V7W|1|DA|U|2022
4V7W|1|DA|G|2023
*
4V7W|1|DA|C|2040
4V7W|1|DA|U|2041
4V7W|1|DA|A|2042
4V7W|1|DA|C|2043
*
4V7W|1|DA|G|2625
4V7W|1|DA|C|2626
4V7W|1|DA|G|2627
4V7W|1|DA|C|2628
4V7W|1|DA|A|2629
4V7W|1|DA|G|2630
*
4V7W|1|DA|C|2788
4V7W|1|DA|C|2789
4V7W|1|DA|A|2790
4V7W|1|DA|C|2791
4V7W|1|DA|G|2792
4V7W|1|DA|G|2793
4V7W|1|DA|C|2794
4V7W|1|DA|G|2795
4V7W|1|DA|U|2796
4V7W|1|DA|C|2799
4V7W|1|DA|A|2801
4V7W|1|DA|A|2801|||A
4V7W|1|DA|G|2802
4V7W|1|DA|C|2803
4V7W|1|DA|C|2804
4V7W|1|DA|G|2805
4V7W|1|DA|G|2807
4V7W|1|DA|U|2808
4V7W|1|DA|A|2809
4V7W|1|DA|A|2810
4V7W|1|DA|G|2811
*
4V7W|1|DA|C|2889
4V7W|1|DA|G|2891
4V7W|1|DA|A|2892
4V7W|1|DA|G|2893
4V7W|1|DA|G|2894
4V7W|1|DA|U|2895
4V7W|1|DA|C|2896

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D5

50S ribosomal protein L32

Chain DE

50S ribosomal protein L3

Chain DN

50S ribosomal protein L13

Chain DU

50S ribosomal protein L20

Chain DW

50S ribosomal protein L22