J7_4V84_001

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

4V84|1|BA|A|945, 4V84|1|BA|C|974|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|BA|C|817
4V84|1|BA|G|818
4V84|1|BA|A|819
4V84|1|BA|A|820
4V84|1|BA|A|821
4V84|1|BA|U|822
*
4V84|1|BA|A|835
4V84|1|BA|G|836
*
4V84|1|BA|U|943
4V84|1|BA|G|944
4V84|1|BA|A|945
4V84|1|BA|G|946
*
4V84|1|BA|C|971
4V84|1|BA|G|972
4V84|1|BA|A|973
4V84|1|BA|G|974|||A
4V84|1|BA|C|974|||B
4V84|1|BA|G|975
4V84|1|BA|C|976
*
4V84|1|BA|G|987
4V84|1|BA|A|988
4V84|1|BA|G|989
4V84|1|BA|A|990
4V84|1|BA|C|991
*
4V84|1|BA|G|1163
4V84|1|BA|G|1164
*
4V84|1|BA|C|1185
4V84|1|BA|G|1186
4V84|1|BA|G|1187
4V84|1|BA|U|1188
4V84|1|BA|A|1189
4V84|1|BA|G|1190

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L35

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BL

50S ribosomal protein L15

Chain BQ

50S ribosomal protein L20

Chain BR

50S ribosomal protein L21

Chain BZ

50S ribosomal protein L30