3D structure

PDB id
4V85 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
33 nucleotides
Bulged bases
4V85|1|BA|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V85|1|BA|C|817
4V85|1|BA|G|818
4V85|1|BA|A|819
4V85|1|BA|A|820
4V85|1|BA|A|821
4V85|1|BA|G|822
*
4V85|1|BA|C|835
4V85|1|BA|G|836
4V85|1|BA|C|837
*
4V85|1|BA|G|942
4V85|1|BA|A|943
4V85|1|BA|C|944
4V85|1|BA|A|945
4V85|1|BA|C|946
*
4V85|1|BA|G|971
4V85|1|BA|A|972
4V85|1|BA|A|973
4V85|1|BA|G|974
4V85|1|BA|A|975
4V85|1|BA|G|976
*
4V85|1|BA|C|987
4V85|1|BA|A|988
4V85|1|BA|G|989
4V85|1|BA|A|990
4V85|1|BA|C|991
*
4V85|1|BA|G|1163
4V85|1|BA|C|1164
*
4V85|1|BA|G|1185
4V85|1|BA|G|1186
4V85|1|BA|G|1187
4V85|1|BA|U|1188
4V85|1|BA|A|1189
4V85|1|BA|G|1190

Current chains

Chain BA
23S rRNA

Nearby chains

Chain B3
50S ribosomal protein L30
Chain B7
50S ribosomal protein L35
Chain BB
5S ribosomal RNA; 5S rRNA
Chain BP
50S ribosomal protein L15
Chain BU
50S ribosomal protein L20
Chain BV
50S ribosomal protein L21

Coloring options:

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