J7_4V87_004
3D structure
- PDB id
- 4V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 4V87|1|DA|A|945, 4V87|1|DA|C|974|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V87|1|DA|C|817
4V87|1|DA|G|818
4V87|1|DA|A|819
4V87|1|DA|A|820
4V87|1|DA|A|821
4V87|1|DA|U|822
*
4V87|1|DA|A|835
4V87|1|DA|G|836
*
4V87|1|DA|U|943
4V87|1|DA|G|944
4V87|1|DA|A|945
4V87|1|DA|G|946
*
4V87|1|DA|C|971
4V87|1|DA|G|972
4V87|1|DA|A|973
4V87|1|DA|G|974
4V87|1|DA|C|974|||A
4V87|1|DA|G|975
4V87|1|DA|C|976
*
4V87|1|DA|G|987
4V87|1|DA|A|988
4V87|1|DA|G|989
4V87|1|DA|A|990
4V87|1|DA|C|991
*
4V87|1|DA|G|1163
4V87|1|DA|G|1164
*
4V87|1|DA|C|1185
4V87|1|DA|G|1186
4V87|1|DA|G|1187
4V87|1|DA|U|1188
4V87|1|DA|A|1189
4V87|1|DA|G|1190
Current chains
- Chain DA
- RNA (2909-MER)
Nearby chains
- Chain D1
- 50S ribosomal protein L20
- Chain D2
- 50S ribosomal protein L21
- Chain D8
- 50S ribosomal protein L35
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DO
- 50S ribosomal protein L15
- Chain DX
- 50S ribosomal protein L30
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