J7_4V88_002

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

4V88|1|A5|G|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V88|1|A5|C|949
4V88|1|A5|G|950
4V88|1|A5|A|951
4V88|1|A5|A|952
4V88|1|A5|G|953
4V88|1|A5|U|954
*
4V88|1|A5|A|967
4V88|1|A5|G|968
*
4V88|1|A5|U|1114
4V88|1|A5|G|1115
4V88|1|A5|G|1116
4V88|1|A5|G|1117
*
4V88|1|A5|C|1141
4V88|1|A5|G|1142
4V88|1|A5|A|1143
4V88|1|A5|U|1144
4V88|1|A5|G|1145
4V88|1|A5|C|1146
*
4V88|1|A5|G|1157
4V88|1|A5|A|1158
4V88|1|A5|A|1159
4V88|1|A5|C|1160
4V88|1|A5|G|1161
*
4V88|1|A5|C|1338
4V88|1|A5|C|1339
*
4V88|1|A5|G|1365
4V88|1|A5|A|1366
4V88|1|A5|G|1367
4V88|1|A5|U|1368
4V88|1|A5|A|1369
4V88|1|A5|G|1370

Current chains

Chain A5

25S rRNA

Nearby chains

Chain A7

5S ribosomal RNA; 5S rRNA

Chain DC

60S ribosomal protein L4-A

Chain DF

60S ribosomal protein L7-A

Chain DL

60S ribosomal protein L13-A

Chain DQ

60S ribosomal protein L18-A

Chain DT

60S ribosomal protein L21-A

Chain Da

60S ribosomal protein L28

Chain Db

60S ribosomal protein L29

Chain De

60S ribosomal protein L32

Chain Df

60S ribosomal protein L33-A