J7_4V8A_002
3D structure
- PDB id
- 4V8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 4V8A|1|BA|A|945, 4V8A|1|BA|C|975
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8A|1|BA|C|817
4V8A|1|BA|G|818
4V8A|1|BA|A|819
4V8A|1|BA|A|820
4V8A|1|BA|A|821
4V8A|1|BA|U|822
*
4V8A|1|BA|A|835
4V8A|1|BA|G|836
*
4V8A|1|BA|U|943
4V8A|1|BA|G|944
4V8A|1|BA|A|945
4V8A|1|BA|G|946
*
4V8A|1|BA|C|971
4V8A|1|BA|G|972
4V8A|1|BA|A|973
4V8A|1|BA|G|974
4V8A|1|BA|C|975
4V8A|1|BA|G|975|||A
4V8A|1|BA|C|976
*
4V8A|1|BA|G|987
4V8A|1|BA|A|988
4V8A|1|BA|G|989
4V8A|1|BA|A|990
4V8A|1|BA|C|991
*
4V8A|1|BA|G|1163
4V8A|1|BA|G|1164
*
4V8A|1|BA|C|1185
4V8A|1|BA|G|1186
4V8A|1|BA|G|1187
4V8A|1|BA|U|1188
4V8A|1|BA|A|1189
4V8A|1|BA|G|1190
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B3
- 50S ribosomal protein L30
- Chain B8
- 50S ribosomal protein L35
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BP
- 50S ribosomal protein L15
- Chain BU
- 50S ribosomal protein L20
- Chain BV
- 50S ribosomal protein L21
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