J7_4V8C_003

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

4V8C|1|BA|G|530, 4V8C|1|BA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8C|1|BA|A|8
4V8C|1|BA|U|9
4V8C|1|BA|G|10
4V8C|1|BA|G|11
4V8C|1|BA|U|12
4V8C|1|BA|A|13
4V8C|1|BA|A|14
4V8C|1|BA|G|15
*
4V8C|1|BA|U|525
4V8C|1|BA|A|526
4V8C|1|BA|C|527
4V8C|1|BA|A|528
4V8C|1|BA|A|529
4V8C|1|BA|G|530
4V8C|1|BA|C|531
*
4V8C|1|BA|G|2018
4V8C|1|BA|A|2019
4V8C|1|BA|A|2020
4V8C|1|BA|C|2021
4V8C|1|BA|U|2022
4V8C|1|BA|G|2023
*
4V8C|1|BA|C|2040
4V8C|1|BA|U|2041
4V8C|1|BA|A|2042
4V8C|1|BA|C|2043
*
4V8C|1|BA|G|2625
4V8C|1|BA|C|2626
4V8C|1|BA|G|2627
4V8C|1|BA|C|2628
4V8C|1|BA|A|2629
4V8C|1|BA|G|2630
*
4V8C|1|BA|C|2788
4V8C|1|BA|C|2789
*
4V8C|1|BA|G|2894
4V8C|1|BA|U|2895

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain B1

50S ribosomal protein L20

Chain B5

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BM

50S ribosomal protein L13

Chain BS

50S ribosomal protein L22