J7_4V8D_003

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

4V8D|1|DA|G|530, 4V8D|1|DA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8D|1|DA|A|8
4V8D|1|DA|U|9
4V8D|1|DA|G|10
4V8D|1|DA|G|11
4V8D|1|DA|U|12
4V8D|1|DA|A|13
4V8D|1|DA|A|14
4V8D|1|DA|G|15
*
4V8D|1|DA|U|525
4V8D|1|DA|A|526
4V8D|1|DA|C|527
4V8D|1|DA|A|528
4V8D|1|DA|A|529
4V8D|1|DA|G|530
4V8D|1|DA|C|531
*
4V8D|1|DA|G|2018
4V8D|1|DA|A|2019
4V8D|1|DA|A|2020
4V8D|1|DA|C|2021
4V8D|1|DA|U|2022
4V8D|1|DA|G|2023
*
4V8D|1|DA|C|2040
4V8D|1|DA|U|2041
4V8D|1|DA|A|2042
4V8D|1|DA|C|2043
*
4V8D|1|DA|G|2625
4V8D|1|DA|C|2626
4V8D|1|DA|G|2627
4V8D|1|DA|C|2628
4V8D|1|DA|A|2629
4V8D|1|DA|G|2630
*
4V8D|1|DA|C|2788
4V8D|1|DA|C|2789
*
4V8D|1|DA|G|2894
4V8D|1|DA|U|2895

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D1

50S ribosomal protein L20

Chain D5

50S ribosomal protein L32

Chain DE

50S ribosomal protein L3

Chain DM

50S ribosomal protein L13

Chain DS

50S ribosomal protein L22