J7_4V8F_001

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

4V8F|1|AA|G|530, 4V8F|1|AA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8F|1|AA|A|8
4V8F|1|AA|U|9
4V8F|1|AA|G|10
4V8F|1|AA|G|11
4V8F|1|AA|U|12
4V8F|1|AA|A|13
4V8F|1|AA|A|14
4V8F|1|AA|G|15
*
4V8F|1|AA|U|525
4V8F|1|AA|A|526
4V8F|1|AA|C|527
4V8F|1|AA|A|528
4V8F|1|AA|A|529
4V8F|1|AA|G|530
4V8F|1|AA|C|531
*
4V8F|1|AA|G|2018
4V8F|1|AA|A|2019
4V8F|1|AA|A|2020
4V8F|1|AA|C|2021
4V8F|1|AA|U|2022
4V8F|1|AA|G|2023
*
4V8F|1|AA|C|2040
4V8F|1|AA|U|2041
4V8F|1|AA|A|2042
4V8F|1|AA|C|2043
*
4V8F|1|AA|G|2625
4V8F|1|AA|C|2626
4V8F|1|AA|G|2627
4V8F|1|AA|C|2628
4V8F|1|AA|A|2629
4V8F|1|AA|G|2630
*
4V8F|1|AA|C|2788
4V8F|1|AA|C|2789
*
4V8F|1|AA|G|2894
4V8F|1|AA|U|2895

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A1

50S ribosomal protein L20

Chain A5

50S ribosomal protein L32

Chain AE

50S ribosomal protein L3

Chain AM

50S ribosomal protein L13

Chain AS

50S ribosomal protein L22