J7_4V8F_002

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

4V8F|1|AA|A|945, 4V8F|1|AA|C|974|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8F|1|AA|C|817
4V8F|1|AA|G|818
4V8F|1|AA|A|819
4V8F|1|AA|A|820
4V8F|1|AA|A|821
4V8F|1|AA|U|822
*
4V8F|1|AA|A|835
4V8F|1|AA|G|836
*
4V8F|1|AA|U|943
4V8F|1|AA|G|944
4V8F|1|AA|A|945
4V8F|1|AA|G|946
*
4V8F|1|AA|C|971
4V8F|1|AA|G|972
4V8F|1|AA|A|973
4V8F|1|AA|G|974
4V8F|1|AA|C|974|||A
4V8F|1|AA|G|975
4V8F|1|AA|C|976
*
4V8F|1|AA|G|987
4V8F|1|AA|A|988
4V8F|1|AA|G|989
4V8F|1|AA|A|990
4V8F|1|AA|C|991
*
4V8F|1|AA|G|1163
4V8F|1|AA|G|1164
*
4V8F|1|AA|C|1185
4V8F|1|AA|G|1186
4V8F|1|AA|G|1187
4V8F|1|AA|U|1188
4V8F|1|AA|A|1189
4V8F|1|AA|G|1190

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A1

50S ribosomal protein L20

Chain A2

50S ribosomal protein L21

Chain A8

50S ribosomal protein L35

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AO

50S ribosomal protein L15

Chain AX

50S ribosomal protein L30