J7_4V8Y_001
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 4V8Y|1|B5|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8Y|1|B5|C|949
4V8Y|1|B5|G|950
4V8Y|1|B5|A|951
4V8Y|1|B5|A|952
4V8Y|1|B5|G|953
4V8Y|1|B5|U|954
*
4V8Y|1|B5|A|967
4V8Y|1|B5|G|968
*
4V8Y|1|B5|U|1114
4V8Y|1|B5|G|1115
4V8Y|1|B5|G|1116
4V8Y|1|B5|G|1117
*
4V8Y|1|B5|C|1141
4V8Y|1|B5|G|1142
4V8Y|1|B5|A|1143
4V8Y|1|B5|U|1144
4V8Y|1|B5|G|1145
4V8Y|1|B5|C|1146
*
4V8Y|1|B5|G|1157
4V8Y|1|B5|A|1158
4V8Y|1|B5|A|1159
4V8Y|1|B5|C|1160
4V8Y|1|B5|G|1161
*
4V8Y|1|B5|C|1338
4V8Y|1|B5|C|1339
*
4V8Y|1|B5|G|1365
4V8Y|1|B5|A|1366
4V8Y|1|B5|G|1367
4V8Y|1|B5|U|1368
4V8Y|1|B5|A|1369
4V8Y|1|B5|G|1370
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BC
- 60S RIBOSOMAL PROTEIN L4-A
- Chain BF
- 60S RIBOSOMAL PROTEIN L7-A
- Chain BL
- 60S RIBOSOMAL PROTEIN L13-A
- Chain BQ
- 60S RIBOSOMAL PROTEIN L18-A
- Chain BT
- 60S RIBOSOMAL PROTEIN L21-A
- Chain Ba
- 60S RIBOSOMAL PROTEIN L28
- Chain Bb
- 60S RIBOSOMAL PROTEIN L29
- Chain Be
- 60S RIBOSOMAL PROTEIN L32
- Chain Bf
- 60S RIBOSOMAL PROTEIN L33-A
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