J7_4V9F_001

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAAAC*GACC*GAUUCCG*CAGGAG*CAGAG*CC*GAGUAG

Length

36 nucleotides

Bulged bases

4V9F|1|0|C|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J7_43074.1

Basepair signature

cWW-tSH-tHW-cSH-tHH-tHS-F-cWW-cHS-cWW-F-cWW-F-cWW-tSH-F-F-F-F-cWW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4V9F|1|0|C|910
4V9F|1|0|G|911
4V9F|1|0|A|912
4V9F|1|0|A|913
4V9F|1|0|A|914
4V9F|1|0|C|915
*
4V9F|1|0|G|928
4V9F|1|0|A|929
4V9F|1|0|C|930
4V9F|1|0|C|931
*
4V9F|1|0|G|1039
4V9F|1|0|A|1040
4V9F|1|0|U|1041
4V9F|1|0|U|1042
4V9F|1|0|C|1043
4V9F|1|0|C|1044
4V9F|1|0|G|1045
*
4V9F|1|0|C|1069
4V9F|1|0|A|1070
4V9F|1|0|G|1071
4V9F|1|0|G|1072
4V9F|1|0|A|1073
4V9F|1|0|G|1074
*
4V9F|1|0|C|1085
4V9F|1|0|A|1086
4V9F|1|0|G|1087
4V9F|1|0|A|1088
4V9F|1|0|G|1089
*
4V9F|1|0|C|1267
4V9F|1|0|C|1268
*
4V9F|1|0|G|1290
4V9F|1|0|A|1291
4V9F|1|0|G|1292
4V9F|1|0|U|1293
4V9F|1|0|A|1294
4V9F|1|0|G|1295

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15P

Chain W

50S ribosomal protein L30P

Chain Y

50S ribosomal protein L32e