J7_4V9Q_001

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

4V9Q|1|AA|A|945, 4V9Q|1|AA|C|974|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9Q|1|AA|C|817
4V9Q|1|AA|G|818
4V9Q|1|AA|A|819
4V9Q|1|AA|A|820
4V9Q|1|AA|A|821
4V9Q|1|AA|U|822
*
4V9Q|1|AA|A|835
4V9Q|1|AA|G|836
*
4V9Q|1|AA|U|943
4V9Q|1|AA|G|944
4V9Q|1|AA|A|945
4V9Q|1|AA|G|946
*
4V9Q|1|AA|C|971
4V9Q|1|AA|G|972
4V9Q|1|AA|A|973
4V9Q|1|AA|G|974|||A
4V9Q|1|AA|C|974|||B
4V9Q|1|AA|G|975
4V9Q|1|AA|C|976
*
4V9Q|1|AA|G|987
4V9Q|1|AA|A|988
4V9Q|1|AA|G|989
4V9Q|1|AA|A|990
4V9Q|1|AA|C|991
*
4V9Q|1|AA|G|1163
4V9Q|1|AA|G|1164
*
4V9Q|1|AA|C|1185
4V9Q|1|AA|G|1186
4V9Q|1|AA|G|1187
4V9Q|1|AA|U|1188
4V9Q|1|AA|A|1189
4V9Q|1|AA|G|1190

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L35

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AL

50S ribosomal protein L15

Chain AQ

50S ribosomal protein L20

Chain AR

50S ribosomal protein L21

Chain AZ

50S ribosomal protein L30