J7_4V9R_001

3D structure

PDB id

4V9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

4V9R|1|BA|G|555, 4V9R|1|BA|C|2043

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9R|1|BA|A|8
4V9R|1|BA|U|9
4V9R|1|BA|G|10
4V9R|1|BA|G|11
4V9R|1|BA|U|12
4V9R|1|BA|A|13
4V9R|1|BA|A|14
4V9R|1|BA|G|15
*
4V9R|1|BA|U|550
4V9R|1|BA|A|551
4V9R|1|BA|C|552
4V9R|1|BA|A|553
4V9R|1|BA|A|554
4V9R|1|BA|G|555
4V9R|1|BA|C|556
*
4V9R|1|BA|G|2040
4V9R|1|BA|A|2041
4V9R|1|BA|A|2042
4V9R|1|BA|C|2043
4V9R|1|BA|U|2044
4V9R|1|BA|G|2045
*
4V9R|1|BA|C|2062
4V9R|1|BA|U|2063
4V9R|1|BA|A|2064
4V9R|1|BA|C|2065
*
4V9R|1|BA|G|2637
4V9R|1|BA|C|2638
4V9R|1|BA|G|2639
4V9R|1|BA|C|2640
4V9R|1|BA|A|2641
4V9R|1|BA|G|2642
*
4V9R|1|BA|C|2801
4V9R|1|BA|C|2802
*
4V9R|1|BA|G|2903
4V9R|1|BA|U|2904

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B5

50S Ribosomal Protein L32

Chain BE

50S Ribosomal Protein L3

Chain BN

50S Ribosomal Protein L13

Chain BU

50S Ribosomal Protein L20

Chain BW

50S Ribosomal Protein L22