J7_4V9S_003

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

4V9S|1|DA|G|530, 4V9S|1|DA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9S|1|DA|A|8
4V9S|1|DA|U|9
4V9S|1|DA|G|10
4V9S|1|DA|G|11
4V9S|1|DA|U|12
4V9S|1|DA|A|13
4V9S|1|DA|A|14
4V9S|1|DA|G|15
*
4V9S|1|DA|U|525
4V9S|1|DA|A|526
4V9S|1|DA|C|527
4V9S|1|DA|A|528
4V9S|1|DA|A|529
4V9S|1|DA|G|530
4V9S|1|DA|C|531
*
4V9S|1|DA|G|2018
4V9S|1|DA|A|2019
4V9S|1|DA|A|2020
4V9S|1|DA|C|2021
4V9S|1|DA|U|2022
4V9S|1|DA|G|2023
*
4V9S|1|DA|C|2040
4V9S|1|DA|U|2041
4V9S|1|DA|A|2042
4V9S|1|DA|C|2043
*
4V9S|1|DA|G|2625
4V9S|1|DA|C|2626
4V9S|1|DA|G|2627
4V9S|1|DA|C|2628
4V9S|1|DA|A|2629
4V9S|1|DA|G|2630
*
4V9S|1|DA|C|2788
4V9S|1|DA|C|2789
*
4V9S|1|DA|G|2894
4V9S|1|DA|U|2895

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D5

50S Ribosomal Protein L32

Chain DE

50S Ribosomal Protein L3

Chain DN

50S Ribosomal Protein L13

Chain DU

50S Ribosomal Protein L20

Chain DW

50S Ribosomal Protein L22