3D structure

PDB id
4V9S (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antibiotic GE82832 bound to 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
Length
32 nucleotides
Bulged bases
4V9S|1|DA|A|945, 4V9S|1|DA|C|975
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V9S|1|DA|C|817
4V9S|1|DA|G|818
4V9S|1|DA|A|819
4V9S|1|DA|A|820
4V9S|1|DA|A|821
4V9S|1|DA|U|822
*
4V9S|1|DA|A|835
4V9S|1|DA|G|836
*
4V9S|1|DA|U|943
4V9S|1|DA|G|944
4V9S|1|DA|A|945
4V9S|1|DA|G|946
*
4V9S|1|DA|C|971
4V9S|1|DA|G|972
4V9S|1|DA|A|973
4V9S|1|DA|G|974
4V9S|1|DA|C|975
4V9S|1|DA|G|975|||A
4V9S|1|DA|C|976
*
4V9S|1|DA|G|987
4V9S|1|DA|A|988
4V9S|1|DA|G|989
4V9S|1|DA|A|990
4V9S|1|DA|C|991
*
4V9S|1|DA|G|1163
4V9S|1|DA|G|1164
*
4V9S|1|DA|C|1185
4V9S|1|DA|G|1186
4V9S|1|DA|G|1187
4V9S|1|DA|U|1188
4V9S|1|DA|A|1189
4V9S|1|DA|G|1190

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain D3
50S Ribosomal Protein L30
Chain D8
50S Ribosomal Protein L35
Chain DB
5S ribosomal RNA; 5S rRNA
Chain DP
50S Ribosomal Protein L15
Chain DU
50S Ribosomal Protein L20
Chain DV
50S Ribosomal Protein L21

Coloring options:

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