J7_4W2H_002

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

4W2H|1|DA|G|530, 4W2H|1|DA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W2H|1|DA|A|8
4W2H|1|DA|U|9
4W2H|1|DA|G|10
4W2H|1|DA|G|11
4W2H|1|DA|U|12
4W2H|1|DA|A|13
4W2H|1|DA|A|14
4W2H|1|DA|G|15
*
4W2H|1|DA|U|525
4W2H|1|DA|A|526
4W2H|1|DA|C|527
4W2H|1|DA|A|528
4W2H|1|DA|A|529
4W2H|1|DA|G|530
4W2H|1|DA|C|531
*
4W2H|1|DA|G|2018
4W2H|1|DA|A|2019
4W2H|1|DA|A|2020
4W2H|1|DA|C|2021
4W2H|1|DA|U|2022
4W2H|1|DA|G|2023
*
4W2H|1|DA|C|2040
4W2H|1|DA|U|2041
4W2H|1|DA|A|2042
4W2H|1|DA|C|2043
*
4W2H|1|DA|G|2625
4W2H|1|DA|C|2626
4W2H|1|DA|G|2627
4W2H|1|DA|C|2628
4W2H|1|DA|A|2629
4W2H|1|DA|G|2630
*
4W2H|1|DA|C|2788
4W2H|1|DA|C|2789
*
4W2H|1|DA|G|2894
4W2H|1|DA|U|2895

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D5

50S Ribosomal Protein L32

Chain DE

50S Ribosomal Protein L3

Chain DN

50S Ribosomal Protein L13

Chain DU

50S Ribosomal Protein L20

Chain DW

50S Ribosomal Protein L22