J7_4W2H_003

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGCG*CGAGAC*GG*CGGUAG

Length

34 nucleotides

Bulged bases

4W2H|1|DA|A|945, 4W2H|1|DA|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W2H|1|DA|C|817
4W2H|1|DA|G|818
4W2H|1|DA|A|819
4W2H|1|DA|A|820
4W2H|1|DA|A|821
4W2H|1|DA|U|822
*
4W2H|1|DA|A|835
4W2H|1|DA|G|836
*
4W2H|1|DA|U|943
4W2H|1|DA|G|944
4W2H|1|DA|A|945
4W2H|1|DA|G|946
*
4W2H|1|DA|C|971
4W2H|1|DA|G|972
4W2H|1|DA|A|973
4W2H|1|DA|G|974
4W2H|1|DA|C|975
4W2H|1|DA|G|975|||A
4W2H|1|DA|C|976
4W2H|1|DA|G|977
*
4W2H|1|DA|C|986
4W2H|1|DA|G|987
4W2H|1|DA|A|988
4W2H|1|DA|G|989
4W2H|1|DA|A|990
4W2H|1|DA|C|991
*
4W2H|1|DA|G|1163
4W2H|1|DA|G|1164
*
4W2H|1|DA|C|1185
4W2H|1|DA|G|1186
4W2H|1|DA|G|1187
4W2H|1|DA|U|1188
4W2H|1|DA|A|1189
4W2H|1|DA|G|1190

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D3

50S Ribosomal Protein L30

Chain D8

50S Ribosomal Protein L35

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DP

50S Ribosomal Protein L15

Chain DU

50S Ribosomal Protein L20

Chain DV

50S Ribosomal Protein L21