J7_4W2I_001

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

4W2I|1|BA|G|555, 4W2I|1|BA|C|2043

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W2I|1|BA|A|8
4W2I|1|BA|U|9
4W2I|1|BA|G|10
4W2I|1|BA|G|11
4W2I|1|BA|U|12
4W2I|1|BA|A|13
4W2I|1|BA|A|14
4W2I|1|BA|G|15
*
4W2I|1|BA|U|550
4W2I|1|BA|A|551
4W2I|1|BA|C|552
4W2I|1|BA|A|553
4W2I|1|BA|A|554
4W2I|1|BA|G|555
4W2I|1|BA|C|556
*
4W2I|1|BA|G|2040
4W2I|1|BA|A|2041
4W2I|1|BA|A|2042
4W2I|1|BA|C|2043
4W2I|1|BA|U|2044
4W2I|1|BA|G|2045
*
4W2I|1|BA|C|2062
4W2I|1|BA|U|2063
4W2I|1|BA|A|2064
4W2I|1|BA|C|2065
*
4W2I|1|BA|G|2637
4W2I|1|BA|C|2638
4W2I|1|BA|G|2639
4W2I|1|BA|C|2640
4W2I|1|BA|A|2641
4W2I|1|BA|G|2642
*
4W2I|1|BA|C|2801
4W2I|1|BA|C|2802
*
4W2I|1|BA|G|2903
4W2I|1|BA|U|2904

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain B5

50S Ribosomal Protein L32

Chain BE

50S Ribosomal Protein L3

Chain BN

50S Ribosomal Protein L13

Chain BU

50S Ribosomal Protein L20

Chain BW

50S Ribosomal Protein L22