J7_4W2I_002
3D structure
- PDB id
- 4W2I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 4W2I|1|BA|A|990, 4W2I|1|BA|C|1020
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4W2I|1|BA|C|864
4W2I|1|BA|G|865
4W2I|1|BA|A|866
4W2I|1|BA|A|867
4W2I|1|BA|A|868
4W2I|1|BA|U|869
*
4W2I|1|BA|A|882
4W2I|1|BA|G|883
*
4W2I|1|BA|U|988
4W2I|1|BA|G|989
4W2I|1|BA|A|990
4W2I|1|BA|G|991
*
4W2I|1|BA|C|1016
4W2I|1|BA|G|1017
4W2I|1|BA|A|1018
4W2I|1|BA|G|1019
4W2I|1|BA|C|1020
4W2I|1|BA|G|1021
4W2I|1|BA|C|1022
*
4W2I|1|BA|G|1033
4W2I|1|BA|A|1034
4W2I|1|BA|G|1035
4W2I|1|BA|A|1036
4W2I|1|BA|C|1037
*
4W2I|1|BA|G|1209
4W2I|1|BA|G|1210
*
4W2I|1|BA|C|1230
4W2I|1|BA|G|1231
4W2I|1|BA|G|1232
4W2I|1|BA|U|1233
4W2I|1|BA|A|1234
4W2I|1|BA|G|1235
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B3
- 50S Ribosomal Protein L30
- Chain B8
- 50S Ribosomal Protein L35
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BP
- 50S Ribosomal Protein L15
- Chain BU
- 50S Ribosomal Protein L20
- Chain BV
- 50S Ribosomal Protein L21
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