J7_4WF1_001
3D structure
- PDB id
- 4WF1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to negamycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.09 Å
Loop
- Sequence
- CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
- Length
- 35 nucleotides
- Bulged bases
- 4WF1|1|BA|U|12, 4WF1|1|BA|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4WF1|1|BA|C|8
4WF1|1|BA|G|9
4WF1|1|BA|A|10
4WF1|1|BA|C|11
4WF1|1|BA|U|12
4WF1|1|BA|A|13
4WF1|1|BA|A|14
4WF1|1|BA|G|15
*
4WF1|1|BA|U|525
4WF1|1|BA|A|526
4WF1|1|BA|C|527
4WF1|1|BA|A|528
4WF1|1|BA|A|529
4WF1|1|BA|G|530
4WF1|1|BA|C|531
*
4WF1|1|BA|G|2018
4WF1|1|BA|A|2019
4WF1|1|BA|A|2020
4WF1|1|BA|C|2021
4WF1|1|BA|U|2022
4WF1|1|BA|C|2023
*
4WF1|1|BA|G|2040
4WF1|1|BA|U|2041
4WF1|1|BA|A|2042
4WF1|1|BA|C|2043
*
4WF1|1|BA|G|2625
4WF1|1|BA|C|2626
4WF1|1|BA|G|2627
4WF1|1|BA|C|2628
4WF1|1|BA|U|2629
4WF1|1|BA|G|2630
*
4WF1|1|BA|C|2788
4WF1|1|BA|C|2789
*
4WF1|1|BA|G|2894
4WF1|1|BA|G|2895
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B0
- 50S ribosomal protein L32
- Chain BD
- 50S ribosomal protein L3
- Chain BJ
- 50S ribosomal protein L13
- Chain BQ
- 50S ribosomal protein L20
- Chain BR
- 50S ribosomal protein L21
- Chain BS
- 50S ribosomal protein L22
Coloring options: