3D structure

PDB id
4WOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
4WOI|1|BA|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4WOI|1|BA|C|8
4WOI|1|BA|G|9
4WOI|1|BA|A|10
4WOI|1|BA|C|11
4WOI|1|BA|U|12
4WOI|1|BA|A|13
4WOI|1|BA|A|14
4WOI|1|BA|G|15
*
4WOI|1|BA|U|525
4WOI|1|BA|A|526
4WOI|1|BA|C|527
4WOI|1|BA|A|528
4WOI|1|BA|A|529
4WOI|1|BA|G|530
4WOI|1|BA|C|531
*
4WOI|1|BA|G|2018
4WOI|1|BA|A|2019
4WOI|1|BA|A|2020
4WOI|1|BA|C|2021
4WOI|1|BA|U|2022
4WOI|1|BA|C|2023
*
4WOI|1|BA|G|2040
4WOI|1|BA|U|2041
4WOI|1|BA|A|2042
4WOI|1|BA|C|2043
*
4WOI|1|BA|G|2625
4WOI|1|BA|C|2626
4WOI|1|BA|G|2627
4WOI|1|BA|C|2628
4WOI|1|BA|U|2629
4WOI|1|BA|G|2630
*
4WOI|1|BA|C|2788
4WOI|1|BA|C|2789
*
4WOI|1|BA|G|2894
4WOI|1|BA|G|2895

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B0
50S ribosomal protein L32
Chain BD
50S ribosomal protein L3
Chain BJ
50S ribosomal protein L13
Chain BQ
50S ribosomal protein L20
Chain BS
50S ribosomal protein L22

Coloring options:

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