J7_4WOI_003

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

4WOI|1|CA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WOI|1|CA|C|8
4WOI|1|CA|G|9
4WOI|1|CA|A|10
4WOI|1|CA|C|11
4WOI|1|CA|U|12
4WOI|1|CA|A|13
4WOI|1|CA|A|14
4WOI|1|CA|G|15
*
4WOI|1|CA|U|525
4WOI|1|CA|A|526
4WOI|1|CA|C|527
4WOI|1|CA|A|528
4WOI|1|CA|A|529
4WOI|1|CA|G|530
4WOI|1|CA|C|531
*
4WOI|1|CA|G|2018
4WOI|1|CA|A|2019
4WOI|1|CA|A|2020
4WOI|1|CA|C|2021
4WOI|1|CA|U|2022
4WOI|1|CA|C|2023
*
4WOI|1|CA|G|2040
4WOI|1|CA|U|2041
4WOI|1|CA|A|2042
4WOI|1|CA|C|2043
*
4WOI|1|CA|G|2625
4WOI|1|CA|C|2626
4WOI|1|CA|G|2627
4WOI|1|CA|C|2628
4WOI|1|CA|U|2629
4WOI|1|CA|G|2630
*
4WOI|1|CA|C|2788
4WOI|1|CA|C|2789
*
4WOI|1|CA|G|2894
4WOI|1|CA|G|2895

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C0

50S ribosomal protein L32

Chain CD

50S ribosomal protein L3

Chain CJ

50S ribosomal protein L13

Chain CQ

50S ribosomal protein L20

Chain CR

50S ribosomal protein L21

Chain CS

50S ribosomal protein L22