J7_4WOI_004

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

4WOI|1|CA|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WOI|1|CA|C|817
4WOI|1|CA|G|818
4WOI|1|CA|A|819
4WOI|1|CA|A|820
4WOI|1|CA|A|821
4WOI|1|CA|G|822
*
4WOI|1|CA|C|835
4WOI|1|CA|G|836
4WOI|1|CA|C|837
4WOI|1|CA|C|838
*
4WOI|1|CA|G|940
4WOI|1|CA|A|941
4WOI|1|CA|G|942
4WOI|1|CA|A|943
4WOI|1|CA|C|944
4WOI|1|CA|A|945
4WOI|1|CA|C|946
*
4WOI|1|CA|G|971
4WOI|1|CA|A|972
4WOI|1|CA|A|973
4WOI|1|CA|G|974
4WOI|1|CA|A|975
4WOI|1|CA|G|976
*
4WOI|1|CA|C|987
4WOI|1|CA|A|988
4WOI|1|CA|G|989
4WOI|1|CA|A|990
4WOI|1|CA|C|991
*
4WOI|1|CA|G|1163
4WOI|1|CA|C|1164
*
4WOI|1|CA|G|1185
4WOI|1|CA|G|1186
4WOI|1|CA|G|1187
4WOI|1|CA|U|1188
4WOI|1|CA|A|1189
4WOI|1|CA|G|1190

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C3

50S ribosomal protein L35

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CL

50S ribosomal protein L15

Chain CQ

50S ribosomal protein L20

Chain CR

50S ribosomal protein L21

Chain CZ

50S ribosomal protein L30