J7_4WPO_002

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

4WPO|1|AA|A|990, 4WPO|1|AA|C|1020

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WPO|1|AA|C|864
4WPO|1|AA|G|865
4WPO|1|AA|A|866
4WPO|1|AA|A|867
4WPO|1|AA|A|868
4WPO|1|AA|U|869
*
4WPO|1|AA|A|882
4WPO|1|AA|G|883
*
4WPO|1|AA|U|988
4WPO|1|AA|G|989
4WPO|1|AA|A|990
4WPO|1|AA|G|991
*
4WPO|1|AA|C|1016
4WPO|1|AA|G|1017
4WPO|1|AA|A|1018
4WPO|1|AA|G|1019
4WPO|1|AA|C|1020
4WPO|1|AA|G|1021
4WPO|1|AA|C|1022
*
4WPO|1|AA|G|1033
4WPO|1|AA|A|1034
4WPO|1|AA|G|1035
4WPO|1|AA|A|1036
4WPO|1|AA|C|1037
*
4WPO|1|AA|G|1209
4WPO|1|AA|G|1210
*
4WPO|1|AA|C|1230
4WPO|1|AA|G|1231
4WPO|1|AA|G|1232
4WPO|1|AA|U|1233
4WPO|1|AA|A|1234
4WPO|1|AA|G|1235

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L30

Chain A8

50S ribosomal protein L35

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AP

50S ribosomal protein L15

Chain AU

50S ribosomal protein L20

Chain AV

50S ribosomal protein L21