J7_4WPO_003

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

4WPO|1|CA|G|530, 4WPO|1|CA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WPO|1|CA|A|8
4WPO|1|CA|U|9
4WPO|1|CA|G|10
4WPO|1|CA|G|11
4WPO|1|CA|U|12
4WPO|1|CA|A|13
4WPO|1|CA|A|14
4WPO|1|CA|G|15
*
4WPO|1|CA|U|525
4WPO|1|CA|A|526
4WPO|1|CA|C|527
4WPO|1|CA|A|528
4WPO|1|CA|A|529
4WPO|1|CA|G|530
4WPO|1|CA|C|531
*
4WPO|1|CA|G|2018
4WPO|1|CA|A|2019
4WPO|1|CA|A|2020
4WPO|1|CA|C|2021
4WPO|1|CA|U|2022
4WPO|1|CA|G|2023
*
4WPO|1|CA|C|2040
4WPO|1|CA|U|2041
4WPO|1|CA|A|2042
4WPO|1|CA|C|2043
*
4WPO|1|CA|G|2625
4WPO|1|CA|C|2626
4WPO|1|CA|G|2627
4WPO|1|CA|C|2628
4WPO|1|CA|A|2629
4WPO|1|CA|G|2630
*
4WPO|1|CA|C|2788
4WPO|1|CA|C|2789
*
4WPO|1|CA|G|2894
4WPO|1|CA|U|2895

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L32

Chain CE

50S ribosomal protein L3

Chain CN

50S ribosomal protein L13

Chain CU

50S ribosomal protein L20

Chain CW

50S ribosomal protein L22