J7_4WQ1_002

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

4WQ1|1|14|A|945, 4WQ1|1|14|C|974|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WQ1|1|14|C|817
4WQ1|1|14|G|818
4WQ1|1|14|A|819
4WQ1|1|14|A|820
4WQ1|1|14|A|821
4WQ1|1|14|U|822
*
4WQ1|1|14|A|835
4WQ1|1|14|G|836
*
4WQ1|1|14|U|943
4WQ1|1|14|G|944
4WQ1|1|14|A|945
4WQ1|1|14|G|946
*
4WQ1|1|14|C|971
4WQ1|1|14|G|972
4WQ1|1|14|A|973
4WQ1|1|14|G|974
4WQ1|1|14|C|974|||A
4WQ1|1|14|G|975
4WQ1|1|14|C|976
*
4WQ1|1|14|G|987
4WQ1|1|14|A|988
4WQ1|1|14|G|989
4WQ1|1|14|A|990
4WQ1|1|14|C|991
*
4WQ1|1|14|G|1163
4WQ1|1|14|G|1164
*
4WQ1|1|14|C|1185
4WQ1|1|14|G|1186
4WQ1|1|14|G|1187
4WQ1|1|14|U|1188
4WQ1|1|14|A|1189
4WQ1|1|14|G|1190

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1J

5S ribosomal RNA; 5S rRNA

Chain 35

50S ribosomal protein L15

Chain 85

50S ribosomal protein L20

Chain 95

50S ribosomal protein L21

Chain H5

50S ribosomal protein L30

Chain M5

50S ribosomal protein L35