J7_4WQR_001

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGCG*CGAGAC*GG*CGGUAG

Length

34 nucleotides

Bulged bases

4WQR|1|14|G|944, 4WQR|1|14|A|945, 4WQR|1|14|C|974|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WQR|1|14|C|817
4WQR|1|14|G|818
4WQR|1|14|A|819
4WQR|1|14|A|820
4WQR|1|14|A|821
4WQR|1|14|U|822
*
4WQR|1|14|A|835
4WQR|1|14|G|836
*
4WQR|1|14|U|943
4WQR|1|14|G|944
4WQR|1|14|A|945
4WQR|1|14|G|946
*
4WQR|1|14|C|971
4WQR|1|14|G|972
4WQR|1|14|A|973
4WQR|1|14|G|974
4WQR|1|14|C|974|||A
4WQR|1|14|G|975
4WQR|1|14|C|976
4WQR|1|14|G|977
*
4WQR|1|14|C|986
4WQR|1|14|G|987
4WQR|1|14|A|988
4WQR|1|14|G|989
4WQR|1|14|A|990
4WQR|1|14|C|991
*
4WQR|1|14|G|1163
4WQR|1|14|G|1164
*
4WQR|1|14|C|1185
4WQR|1|14|G|1186
4WQR|1|14|G|1187
4WQR|1|14|U|1188
4WQR|1|14|A|1189
4WQR|1|14|G|1190

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1J

5S ribosomal RNA; 5S rRNA

Chain 35

50S ribosomal protein L15

Chain 85

50S ribosomal protein L20

Chain 95

50S ribosomal protein L21

Chain H5

50S ribosomal protein L30

Chain M5

50S ribosomal protein L35