J7_4WQU_001

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

4WQU|1|AA|G|555, 4WQU|1|AA|C|2043

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WQU|1|AA|A|8
4WQU|1|AA|U|9
4WQU|1|AA|G|10
4WQU|1|AA|G|11
4WQU|1|AA|U|12
4WQU|1|AA|A|13
4WQU|1|AA|A|14
4WQU|1|AA|G|15
*
4WQU|1|AA|U|550
4WQU|1|AA|A|551
4WQU|1|AA|C|552
4WQU|1|AA|A|553
4WQU|1|AA|A|554
4WQU|1|AA|G|555
4WQU|1|AA|C|556
*
4WQU|1|AA|G|2040
4WQU|1|AA|A|2041
4WQU|1|AA|A|2042
4WQU|1|AA|C|2043
4WQU|1|AA|U|2044
4WQU|1|AA|G|2045
*
4WQU|1|AA|C|2062
4WQU|1|AA|U|2063
4WQU|1|AA|A|2064
4WQU|1|AA|C|2065
*
4WQU|1|AA|G|2637
4WQU|1|AA|C|2638
4WQU|1|AA|G|2639
4WQU|1|AA|C|2640
4WQU|1|AA|A|2641
4WQU|1|AA|G|2642
*
4WQU|1|AA|C|2801
4WQU|1|AA|C|2802
*
4WQU|1|AA|G|2903
4WQU|1|AA|U|2904

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L32

Chain AE

50S ribosomal protein L3

Chain AN

50S ribosomal protein L13

Chain AU

50S ribosomal protein L20

Chain AW

50S ribosomal protein L22