J7_4WQU_003

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

4WQU|1|CA|G|530, 4WQU|1|CA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WQU|1|CA|A|8
4WQU|1|CA|U|9
4WQU|1|CA|G|10
4WQU|1|CA|G|11
4WQU|1|CA|U|12
4WQU|1|CA|A|13
4WQU|1|CA|A|14
4WQU|1|CA|G|15
*
4WQU|1|CA|U|525
4WQU|1|CA|A|526
4WQU|1|CA|C|527
4WQU|1|CA|A|528
4WQU|1|CA|A|529
4WQU|1|CA|G|530
4WQU|1|CA|C|531
*
4WQU|1|CA|G|2018
4WQU|1|CA|A|2019
4WQU|1|CA|A|2020
4WQU|1|CA|C|2021
4WQU|1|CA|U|2022
4WQU|1|CA|G|2023
*
4WQU|1|CA|C|2040
4WQU|1|CA|U|2041
4WQU|1|CA|A|2042
4WQU|1|CA|C|2043
*
4WQU|1|CA|G|2625
4WQU|1|CA|C|2626
4WQU|1|CA|G|2627
4WQU|1|CA|C|2628
4WQU|1|CA|A|2629
4WQU|1|CA|G|2630
*
4WQU|1|CA|C|2788
4WQU|1|CA|C|2789
*
4WQU|1|CA|G|2894
4WQU|1|CA|U|2895

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L32

Chain CE

50S ribosomal protein L3

Chain CN

50S ribosomal protein L13

Chain CU

50S ribosomal protein L20

Chain CW

50S ribosomal protein L22