J7_4WQU_004

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

4WQU|1|CA|A|945, 4WQU|1|CA|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WQU|1|CA|C|817
4WQU|1|CA|G|818
4WQU|1|CA|A|819
4WQU|1|CA|A|820
4WQU|1|CA|A|821
4WQU|1|CA|U|822
*
4WQU|1|CA|A|835
4WQU|1|CA|G|836
*
4WQU|1|CA|U|943
4WQU|1|CA|G|944
4WQU|1|CA|A|945
4WQU|1|CA|G|946
*
4WQU|1|CA|C|971
4WQU|1|CA|G|972
4WQU|1|CA|A|973
4WQU|1|CA|G|974
4WQU|1|CA|C|975
4WQU|1|CA|G|975|||A
4WQU|1|CA|C|976
*
4WQU|1|CA|G|987
4WQU|1|CA|A|988
4WQU|1|CA|G|989
4WQU|1|CA|A|990
4WQU|1|CA|C|991
*
4WQU|1|CA|G|1163
4WQU|1|CA|G|1164
*
4WQU|1|CA|C|1185
4WQU|1|CA|G|1186
4WQU|1|CA|G|1187
4WQU|1|CA|U|1188
4WQU|1|CA|A|1189
4WQU|1|CA|G|1190

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C3

50S ribosomal protein L30

Chain C8

50S ribosomal protein L35

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CP

50S ribosomal protein L15

Chain CU

50S ribosomal protein L20

Chain CV

50S ribosomal protein L21