J7_4WRA_001

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACGGCGUCAAGCCGGUAAG*CGAGGU

Length

58 nucleotides

Bulged bases

4WRA|1|14|G|530, 4WRA|1|14|C|2021, 4WRA|1|14|U|2797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WRA|1|14|A|8
4WRA|1|14|U|9
4WRA|1|14|G|10
4WRA|1|14|G|11
4WRA|1|14|U|12
4WRA|1|14|A|13
4WRA|1|14|A|14
4WRA|1|14|G|15
*
4WRA|1|14|U|525
4WRA|1|14|A|526
4WRA|1|14|C|527
4WRA|1|14|A|528
4WRA|1|14|A|529
4WRA|1|14|G|530
4WRA|1|14|C|531
*
4WRA|1|14|G|2018
4WRA|1|14|A|2019
4WRA|1|14|A|2020
4WRA|1|14|C|2021
4WRA|1|14|U|2022
4WRA|1|14|G|2023
*
4WRA|1|14|C|2040
4WRA|1|14|U|2041
4WRA|1|14|A|2042
4WRA|1|14|C|2043
*
4WRA|1|14|G|2625
4WRA|1|14|C|2626
4WRA|1|14|G|2627
4WRA|1|14|C|2628
4WRA|1|14|A|2629
4WRA|1|14|G|2630
*
4WRA|1|14|C|2788
4WRA|1|14|C|2789
4WRA|1|14|A|2790
4WRA|1|14|C|2791
4WRA|1|14|G|2792
4WRA|1|14|G|2793
4WRA|1|14|C|2794
4WRA|1|14|G|2795
4WRA|1|14|U|2797
4WRA|1|14|C|2798
4WRA|1|14|A|2799
4WRA|1|14|A|2801
4WRA|1|14|G|2802
4WRA|1|14|C|2803
4WRA|1|14|C|2804
4WRA|1|14|G|2805
4WRA|1|14|G|2807
4WRA|1|14|U|2808
4WRA|1|14|A|2809
4WRA|1|14|A|2810
4WRA|1|14|G|2811
*
4WRA|1|14|C|2889
4WRA|1|14|G|2891
4WRA|1|14|A|2892
4WRA|1|14|G|2893
4WRA|1|14|G|2894
4WRA|1|14|U|2895

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 29

50S ribosomal protein L3

Chain 85

50S ribosomal protein L20

Chain A5

50S ribosomal protein L22

Chain J5

50S ribosomal protein L32