J7_4WSD_003
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 4WSD|1|1H|A|945, 4WSD|1|1H|C|974|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4WSD|1|1H|C|817
4WSD|1|1H|G|818
4WSD|1|1H|A|819
4WSD|1|1H|A|820
4WSD|1|1H|A|821
4WSD|1|1H|U|822
*
4WSD|1|1H|A|835
4WSD|1|1H|G|836
*
4WSD|1|1H|U|943
4WSD|1|1H|G|944
4WSD|1|1H|A|945
4WSD|1|1H|G|946
*
4WSD|1|1H|C|971
4WSD|1|1H|G|972
4WSD|1|1H|A|973
4WSD|1|1H|G|974
4WSD|1|1H|C|974|||A
4WSD|1|1H|G|975
4WSD|1|1H|C|976
*
4WSD|1|1H|G|987
4WSD|1|1H|A|988
4WSD|1|1H|G|989
4WSD|1|1H|A|990
4WSD|1|1H|C|991
*
4WSD|1|1H|G|1163
4WSD|1|1H|G|1164
*
4WSD|1|1H|C|1185
4WSD|1|1H|G|1186
4WSD|1|1H|G|1187
4WSD|1|1H|U|1188
4WSD|1|1H|A|1189
4WSD|1|1H|G|1190
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 16
- 5S ribosomal RNA; 5S rRNA
- Chain 78
- 50S ribosomal protein L15
- Chain C8
- 50S ribosomal protein L20
- Chain D8
- 50S ribosomal protein L21
- Chain L8
- 50S ribosomal protein L30
- Chain Q8
- 50S ribosomal protein L35
Coloring options: