J7_4WT1_002

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGCG*CGAGAC*GG*CGGUAG

Length

34 nucleotides

Bulged bases

4WT1|1|14|A|945, 4WT1|1|14|C|974|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WT1|1|14|C|817
4WT1|1|14|G|818
4WT1|1|14|A|819
4WT1|1|14|A|820
4WT1|1|14|A|821
4WT1|1|14|U|822
*
4WT1|1|14|A|835
4WT1|1|14|G|836
*
4WT1|1|14|U|943
4WT1|1|14|G|944
4WT1|1|14|A|945
4WT1|1|14|G|946
*
4WT1|1|14|C|971
4WT1|1|14|G|972
4WT1|1|14|A|973
4WT1|1|14|G|974
4WT1|1|14|C|974|||A
4WT1|1|14|G|975
4WT1|1|14|C|976
4WT1|1|14|G|977
*
4WT1|1|14|C|986
4WT1|1|14|G|987
4WT1|1|14|A|988
4WT1|1|14|G|989
4WT1|1|14|A|990
4WT1|1|14|C|991
*
4WT1|1|14|G|1163
4WT1|1|14|G|1164
*
4WT1|1|14|C|1185
4WT1|1|14|G|1186
4WT1|1|14|G|1187
4WT1|1|14|U|1188
4WT1|1|14|A|1189
4WT1|1|14|G|1190

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1J

5S ribosomal RNA; 5S rRNA

Chain 35

50S ribosomal protein L15

Chain 85

50S ribosomal protein L20

Chain 95

50S ribosomal protein L21

Chain H5

50S ribosomal protein L30

Chain M5

50S ribosomal protein L35