J7_4WT1_003

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

AAGAUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACGGCGUCAAGCCGGUAAG*CGAGGUCUU

Length

64 nucleotides

Bulged bases

4WT1|1|1H|G|530, 4WT1|1|1H|C|2021, 4WT1|1|1H|U|2797, 4WT1|1|1H|C|2798, 4WT1|1|1H|A|2799, 4WT1|1|1H|A|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WT1|1|1H|A|5
4WT1|1|1H|A|6
4WT1|1|1H|G|7
4WT1|1|1H|A|8
4WT1|1|1H|U|9
4WT1|1|1H|G|10
4WT1|1|1H|G|11
4WT1|1|1H|U|12
4WT1|1|1H|A|13
4WT1|1|1H|A|14
4WT1|1|1H|G|15
*
4WT1|1|1H|U|525
4WT1|1|1H|A|526
4WT1|1|1H|C|527
4WT1|1|1H|A|528
4WT1|1|1H|A|529
4WT1|1|1H|G|530
4WT1|1|1H|C|531
*
4WT1|1|1H|G|2018
4WT1|1|1H|A|2019
4WT1|1|1H|A|2020
4WT1|1|1H|C|2021
4WT1|1|1H|U|2022
4WT1|1|1H|G|2023
*
4WT1|1|1H|C|2040
4WT1|1|1H|U|2041
4WT1|1|1H|A|2042
4WT1|1|1H|C|2043
*
4WT1|1|1H|G|2625
4WT1|1|1H|C|2626
4WT1|1|1H|G|2627
4WT1|1|1H|C|2628
4WT1|1|1H|A|2629
4WT1|1|1H|G|2630
*
4WT1|1|1H|C|2788
4WT1|1|1H|C|2789
4WT1|1|1H|A|2790
4WT1|1|1H|C|2791
4WT1|1|1H|G|2792
4WT1|1|1H|G|2793
4WT1|1|1H|C|2794
4WT1|1|1H|G|2795
4WT1|1|1H|U|2797
4WT1|1|1H|C|2798
4WT1|1|1H|A|2799
4WT1|1|1H|A|2801
4WT1|1|1H|G|2802
4WT1|1|1H|C|2803
4WT1|1|1H|C|2804
4WT1|1|1H|G|2805
4WT1|1|1H|G|2807
4WT1|1|1H|U|2808
4WT1|1|1H|A|2809
4WT1|1|1H|A|2810
4WT1|1|1H|G|2811
*
4WT1|1|1H|C|2889
4WT1|1|1H|G|2891
4WT1|1|1H|A|2892
4WT1|1|1H|G|2893
4WT1|1|1H|G|2894
4WT1|1|1H|U|2895
4WT1|1|1H|C|2896
4WT1|1|1H|U|2897
4WT1|1|1H|U|2898

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 58

50S ribosomal protein L13

Chain C8

50S ribosomal protein L20

Chain E8

50S ribosomal protein L22

Chain N8

50S ribosomal protein L32