J7_4YBB_003

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

4YBB|1|DA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4YBB|1|DA|C|8
4YBB|1|DA|G|9
4YBB|1|DA|A|10
4YBB|1|DA|C|11
4YBB|1|DA|U|12
4YBB|1|DA|A|13
4YBB|1|DA|A|14
4YBB|1|DA|G|15
*
4YBB|1|DA|U|525
4YBB|1|DA|A|526
4YBB|1|DA|C|527
4YBB|1|DA|A|528
4YBB|1|DA|A|529
4YBB|1|DA|G|530
4YBB|1|DA|C|531
*
4YBB|1|DA|G|2018
4YBB|1|DA|A|2019
4YBB|1|DA|A|2020
4YBB|1|DA|C|2021
4YBB|1|DA|U|2022
4YBB|1|DA|C|2023
*
4YBB|1|DA|G|2040
4YBB|1|DA|U|2041
4YBB|1|DA|A|2042
4YBB|1|DA|C|2043
*
4YBB|1|DA|G|2625
4YBB|1|DA|C|2626
4YBB|1|DA|G|2627
4YBB|1|DA|C|2628
4YBB|1|DA|U|2629
4YBB|1|DA|G|2630
*
4YBB|1|DA|C|2788
4YBB|1|DA|C|2789
*
4YBB|1|DA|G|2894
4YBB|1|DA|G|2895

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DK

50S ribosomal protein L13

Chain DR

50S ribosomal protein L20

Chain DT

50S ribosomal protein L22