J7_4YPB_002
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 4YPB|1|YA|A|945, 4YPB|1|YA|C|974|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4YPB|1|YA|C|817
4YPB|1|YA|G|818
4YPB|1|YA|A|819
4YPB|1|YA|A|820
4YPB|1|YA|A|821
4YPB|1|YA|U|822
*
4YPB|1|YA|A|835
4YPB|1|YA|G|836
*
4YPB|1|YA|U|943
4YPB|1|YA|G|944
4YPB|1|YA|A|945
4YPB|1|YA|G|946
*
4YPB|1|YA|C|971
4YPB|1|YA|G|972
4YPB|1|YA|A|973
4YPB|1|YA|G|974
4YPB|1|YA|C|974|||A
4YPB|1|YA|G|975
4YPB|1|YA|C|976
*
4YPB|1|YA|G|987
4YPB|1|YA|A|988
4YPB|1|YA|G|989
4YPB|1|YA|A|990
4YPB|1|YA|C|991
*
4YPB|1|YA|G|1163
4YPB|1|YA|G|1164
*
4YPB|1|YA|C|1185
4YPB|1|YA|G|1186
4YPB|1|YA|G|1187
4YPB|1|YA|U|1188
4YPB|1|YA|A|1189
4YPB|1|YA|G|1190
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y3
- 50S ribosomal protein L30
- Chain Y8
- 50S ribosomal protein L35
- Chain YB
- 5S ribosomal RNA; 5S rRNA
- Chain YP
- 50S ribosomal protein L15
- Chain YU
- 50S ribosomal protein L20
- Chain YV
- 50S ribosomal protein L21
Coloring options: