J7_4YZV_001
3D structure
- PDB id
- 4YZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
- Length
- 35 nucleotides
- Bulged bases
- 4YZV|1|RA|G|530, 4YZV|1|RA|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4YZV|1|RA|A|8
4YZV|1|RA|U|9
4YZV|1|RA|G|10
4YZV|1|RA|G|11
4YZV|1|RA|U|12
4YZV|1|RA|A|13
4YZV|1|RA|A|14
4YZV|1|RA|G|15
*
4YZV|1|RA|U|525
4YZV|1|RA|A|526
4YZV|1|RA|C|527
4YZV|1|RA|A|528
4YZV|1|RA|A|529
4YZV|1|RA|G|530
4YZV|1|RA|C|531
*
4YZV|1|RA|G|2018
4YZV|1|RA|A|2019
4YZV|1|RA|A|2020
4YZV|1|RA|C|2021
4YZV|1|RA|U|2022
4YZV|1|RA|G|2023
*
4YZV|1|RA|C|2040
4YZV|1|RA|U|2041
4YZV|1|RA|A|2042
4YZV|1|RA|C|2043
*
4YZV|1|RA|G|2625
4YZV|1|RA|C|2626
4YZV|1|RA|G|2627
4YZV|1|RA|C|2628
4YZV|1|RA|A|2629
4YZV|1|RA|G|2630
*
4YZV|1|RA|C|2788
4YZV|1|RA|C|2789
*
4YZV|1|RA|G|2894
4YZV|1|RA|U|2895
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R5
- 50S ribosomal protein L32
- Chain RE
- 50S ribosomal protein L3
- Chain RN
- 50S ribosomal protein L13
- Chain RU
- 50S ribosomal protein L20
- Chain RW
- 50S ribosomal protein L22
Coloring options: