J7_4Z8C_001
3D structure
- PDB id
- 4Z8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 4Z8C|1|1A|A|989, 4Z8C|1|1A|C|1019
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4Z8C|1|1A|C|863
4Z8C|1|1A|G|864
4Z8C|1|1A|A|865
4Z8C|1|1A|A|866
4Z8C|1|1A|A|867
4Z8C|1|1A|U|868
*
4Z8C|1|1A|A|881
4Z8C|1|1A|G|882
*
4Z8C|1|1A|U|987
4Z8C|1|1A|G|988
4Z8C|1|1A|A|989
4Z8C|1|1A|G|990
*
4Z8C|1|1A|C|1015
4Z8C|1|1A|G|1016
4Z8C|1|1A|A|1017
4Z8C|1|1A|G|1018
4Z8C|1|1A|C|1019
4Z8C|1|1A|G|1020
4Z8C|1|1A|C|1021
*
4Z8C|1|1A|G|1032
4Z8C|1|1A|A|1033
4Z8C|1|1A|G|1034
4Z8C|1|1A|A|1035
4Z8C|1|1A|C|1036
*
4Z8C|1|1A|G|1208
4Z8C|1|1A|G|1209
*
4Z8C|1|1A|C|1229
4Z8C|1|1A|G|1230
4Z8C|1|1A|G|1231
4Z8C|1|1A|U|1232
4Z8C|1|1A|A|1233
4Z8C|1|1A|G|1234
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 13
- 50S ribosomal protein L30
- Chain 18
- 50S ribosomal protein L35
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1P
- 50S ribosomal protein L15
- Chain 1U
- 50S ribosomal protein L20
- Chain 1V
- 50S ribosomal protein L21
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