J7_4Z8C_002

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

4Z8C|1|2A|G|554, 4Z8C|1|2A|C|2042

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Z8C|1|2A|A|7
4Z8C|1|2A|U|8
4Z8C|1|2A|G|9
4Z8C|1|2A|G|10
4Z8C|1|2A|U|11
4Z8C|1|2A|A|12
4Z8C|1|2A|A|13
4Z8C|1|2A|G|14
*
4Z8C|1|2A|U|549
4Z8C|1|2A|A|550
4Z8C|1|2A|C|551
4Z8C|1|2A|A|552
4Z8C|1|2A|A|553
4Z8C|1|2A|G|554
4Z8C|1|2A|C|555
*
4Z8C|1|2A|G|2039
4Z8C|1|2A|A|2040
4Z8C|1|2A|A|2041
4Z8C|1|2A|C|2042
4Z8C|1|2A|U|2043
4Z8C|1|2A|G|2044
*
4Z8C|1|2A|C|2061
4Z8C|1|2A|U|2062
4Z8C|1|2A|A|2063
4Z8C|1|2A|C|2064
*
4Z8C|1|2A|G|2636
4Z8C|1|2A|C|2637
4Z8C|1|2A|G|2638
4Z8C|1|2A|C|2639
4Z8C|1|2A|A|2640
4Z8C|1|2A|G|2641
*
4Z8C|1|2A|C|2800
4Z8C|1|2A|C|2801
*
4Z8C|1|2A|G|2902
4Z8C|1|2A|U|2903

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22