Loop J7_5AFI

3D structure

PDB id: 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
Description: 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Loop

Sequence: CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length: 35 nucleotides
Bulged bases: 5AFI|1|A|C|2021||||P_1
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5AFI|1|A|C|8||||P_1
5AFI|1|A|G|9||||P_1
5AFI|1|A|A|10||||P_1
5AFI|1|A|C|11||||P_1
5AFI|1|A|U|12||||P_1
5AFI|1|A|A|13||||P_1
5AFI|1|A|A|14||||P_1
5AFI|1|A|G|15||||P_1
*
5AFI|1|A|U|525||||P_1
5AFI|1|A|A|526||||P_1
5AFI|1|A|C|527||||P_1
5AFI|1|A|A|528||||P_1
5AFI|1|A|A|529||||P_1
5AFI|1|A|G|530||||P_1
5AFI|1|A|C|531||||P_1
*
5AFI|1|A|G|2018||||P_1
5AFI|1|A|A|2019||||P_1
5AFI|1|A|A|2020||||P_1
5AFI|1|A|C|2021||||P_1
5AFI|1|A|U|2022||||P_1
5AFI|1|A|C|2023||||P_1
*
5AFI|1|A|G|2040||||P_1
5AFI|1|A|U|2041||||P_1
5AFI|1|A|A|2042||||P_1
5AFI|1|A|C|2043||||P_1
*
5AFI|1|A|G|2625||||P_1
5AFI|1|A|C|2626||||P_1
5AFI|1|A|G|2627||||P_1
5AFI|1|A|C|2628||||P_1
5AFI|1|A|U|2629||||P_1
5AFI|1|A|G|2630||||P_1
*
5AFI|1|A|C|2788||||P_1
5AFI|1|A|C|2789||||P_1
*
5AFI|1|A|G|2894||||P_1
5AFI|1|A|G|2895||||P_1

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain 0: 50S ribosomal protein L32
Chain D: 50S ribosomal protein L3
Chain J: 50S ribosomal protein L13
Chain Q: 50S ribosomal protein L20
Chain S: 50S ribosomal protein L22

J7_5AFI_001